CRAN Package Check Results for Package diversitree

Last updated on 2015-04-18 23:50:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-7 26.94 60.67 87.62 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-7 30.57 60.16 90.73 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-7 177.18 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-7 167.54 NOTE
r-devel-osx-x86_64-clang 0.9-7 139.99 NOTE
r-patched-linux-x86_64 0.9-7 32.20 61.32 93.52 NOTE
r-patched-solaris-sparc 0.9-7 1091.60 NOTE
r-patched-solaris-x86 0.9-7 206.90 NOTE
r-release-linux-x86_64 0.9-7 30.32 60.58 90.90 NOTE
r-release-osx-x86_64-mavericks 0.9-7 ERROR
r-release-osx-x86_64-snowleopard 0.9-7 NOTE
r-release-windows-ix86+x86_64 0.9-7 119.00 160.00 279.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9-7 122.00 199.00 321.00 OK

Check Details

Version: 0.9-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘lubridate’ ‘minqa’ ‘numDeriv’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 0.9-7
Check: R code for possible problems
Result: NOTE
    make.every.so.often: no visible global function definition for ‘now’
    make.every.so.often : check: no visible global function definition for
     ‘now’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 0.9-7
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     libs 4.3Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.9-7
Check: examples
Result: ERROR
    Running examples in ‘diversitree-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: make.quasse
    > ### Title: Quantitative State Speciation and Extinction Model
    > ### Aliases: make.quasse starting.point.quasse
    > ### Keywords: models
    >
    > ### ** Examples
    >
    > ## Example showing simple integration with two different backends,
    > ## plus the splits.
    > lambda <- function(x) sigmoid.x(x, 0.1, 0.2, 0, 2.5)
    > mu <- function(x) constant.x(x, 0.03)
    > char <- make.brownian.with.drift(0, 0.025)
    >
    > set.seed(1)
    > phy <- tree.quasse(c(lambda, mu, char), max.taxa=15, x0=0,
    + single.lineage=FALSE, verbose=TRUE)
    +: 3 [1.012]
    +: 4 [1.584]
    +: 5 [3.616]
    +: 6 [6.170]
    -: 5 [6.201]
    +: 6 [6.927]
    +: 7 [7.912]
    +: 8 [9.209]
    +: 9 [9.463]
    +: 10 [9.823]
    -: 9 [10.944]
    +: 10 [11.295]
    +: 11 [11.620]
    +: 12 [11.715]
    +: 13 [12.604]
    +: 14 [12.883]
    +: 15 [13.473]
    +: 16 [13.773]
    >
    > nodes <- c("nd13", "nd9", "nd5")
    > split.t <- Inf
    >
    > pars <- c(.1, .2, 0, 2.5, .03, 0, .01)
    > pars4 <- unlist(rep(list(pars), 4))
    >
    > sd <- 1/200
    > control.C.1 <- list(dt.max=1/200)
    >
    > control.R.1 <- list(dt.max=1/200, method="fftR")
    > lik.C.1 <- make.quasse(phy, phy$tip.state, sd, sigmoid.x, constant.x, control.C.1)
    Error in check.fftC() :
     diversitree was built without FFTW support. See Details in ?make.quasse
    Calls: make.quasse ... make.branches.quasse -> make.branches.quasse.fftC -> check.fftC
    Execution halted
Flavor: r-release-osx-x86_64-mavericks